Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_01870 | Not Available | + | 171161 - 172642 | 52368.9 |
| iron-regulated protein a precursor | shim_01880 | Not Available | + | 172642 - 173664 | 36899.6 |
| hypothetical protein | shim_01890 | Not Available | + | 173666 - 174733 | 37885.3 |
| nitrate reductase | shim_01900 | Q06457 | - | 174737 - 177358 | 92200.8 |
| assimilatory nitrite reductase (nad(p)h) small subunit | shim_01910 | Not Available | - | 177355 - 177693 | 11994.1 |
| nitrite reductase (nad(p)h) | shim_01920 | P42435 | - | 177690 - 180140 | 88025.3 |
| bacterial hemoglobin | shim_01930 | Not Available | - | 180137 - 180562 | 15007.8 |
| bicarbonate transport atp-binding protein cmpd | shim_01940 | P38046 | - | 180568 - 182247 | 61704.9 |
| bicarbonate transport system permease protein cmpb | shim_01950 | Q55106 | - | 182253 - 183335 | 39202.4 |
| bicarbonate transport atp-binding protein cmpc | shim_01960 | P73450 | - | 183492 - 184856 | 50171.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.