Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c6 | shim_01470 | Not Available | + | 135906 - 136352 | 15853.6 |
| nyn domain protein | shim_01480 | Q31LZ8 | - | 136426 - 137001 | 22035.4 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | shim_01490 | P22291 | + | 137156 - 137716 | 20546.8 |
| dna-directed rna polymerase subunit omega | shim_01500 | Q5LNK0 | + | 137790 - 138143 | 12996.2 |
| gtp pyrophosphokinase rsh | shim_01510 | Q8YG65 | + | 138168 - 140330 | 80906.5 |
| hypothetical protein | shim_01520 | Not Available | + | 140349 - 141029 | 25504.1 |
| pyridoxine 5'-phosphate synthase | shim_01530 | Q16AJ0 | + | 141095 - 141829 | 26736.1 |
| hypothetical protein | shim_01540 | Not Available | + | 141826 - 142275 | 15485.6 |
| stress responsive a/b barrel domain protein | shim_01550 | Not Available | + | 142272 - 142583 | 11320.7 |
| holo-(acyl-carrier-protein) synthase | shim_01560 | Q1GDH3 | + | 142580 - 142993 | 15198.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.