Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_01070 | O34305 | + | 100493 - 100939 | 16232.3 |
| disulfide-bond oxidoreductase yfcg | shim_01080 | Not Available | - | 101027 - 101725 | 25404.6 |
| large-conductance mechanosensitive channel | shim_01090 | Q5LMR7 | + | 101872 - 102306 | 15299.8 |
| small-conductance mechanosensitive channel | shim_01100 | Q89AB5 | + | 102419 - 103213 | 28427.5 |
| hypothetical protein | shim_01110 | Not Available | - | 103497 - 105308 | 65025.7 |
| alanine dehydrogenase | shim_01120 | E1V931 | - | 105662 - 106780 | 38505.5 |
| leucine-responsive regulatory protein | shim_01130 | P37424 | + | 106918 - 107376 | 17015.6 |
| alcohol dehydrogenase (acceptor) | shim_01140 | Q9WWW2 | + | 107429 - 109003 | 56716.0 |
| hypothetical protein | shim_01150 | Not Available | - | 109000 - 109443 | 15462.3 |
| sugar efflux transporter c | shim_01160 | Not Available | + | 109661 - 110812 | 39636.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.