Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-ala-d/l-glu epimerase | shim_00870 | P51981 | + | 80553 - 81515 | 34007.1 |
| d-alanine aminotransferase | shim_00880 | Q5HNG0 | + | 81679 - 82539 | 31365.6 |
| bifunctional hemolysin/adenylate cyclase precursor | shim_00890 | Not Available | - | 82667 - 84328 | 54944.0 |
| hypothetical protein | shim_00900 | Not Available | - | 84441 - 84755 | 12182.2 |
| hypothetical protein | shim_00910 | Not Available | - | 84819 - 85058 | 8989.33 |
| n-formylglutamate amidohydrolase | shim_00920 | Not Available | - | 85143 - 85886 | 27263.2 |
| pyruvate kinase | shim_00930 | O05118 | + | 86048 - 87493 | 51768.3 |
| hypothetical protein | shim_00940 | Not Available | + | 87531 - 87758 | 8146.18 |
| 50s ribosomal protein l35 | shim_00950 | Q5LMG4 | + | 87899 - 88099 | 7352.27 |
| 50s ribosomal protein l20 | shim_00960 | Q1GDM1 | + | 88114 - 88479 | 13560.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.