Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine import atp-binding protein pota | shim_00770 | Q1GIE5 | - | 70635 - 71696 | 38037.0 |
| response regulator protein todt | shim_00780 | Not Available | - | 71818 - 72588 | 29066.9 |
| acetyl-coenzyme a carboxylase carboxyl transferase subunit alpha | shim_00790 | Q5LME7 | - | 72963 - 73925 | 34910.8 |
| transposon tn10 tetd protein | shim_00800 | Not Available | + | 74084 - 74935 | 31535.7 |
| hypothetical protein | shim_00810 | Not Available | + | 74932 - 75564 | 23140.5 |
| cysteine/o-acetylserine efflux protein | shim_00820 | Not Available | - | 75540 - 76136 | 21303.7 |
| leucine-responsive regulatory protein | shim_00830 | P56901 | + | 76164 - 76661 | 18223.9 |
| hypothetical protein | shim_00840 | Not Available | - | 76723 - 77973 | 47034.8 |
| malyl-coa lyase | shim_00850 | A4WVF5 | - | 78174 - 79133 | 34000.4 |
| hypothetical protein | shim_00860 | Not Available | + | 79430 - 80431 | 35613.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.