Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator mcbr | shim_00670 | Not Available | + | 56390 - 57043 | 24006.3 |
| enterobactin exporter ents | shim_00680 | Not Available | - | 57163 - 58488 | 47058.1 |
| hypothetical protein | shim_00690 | Not Available | + | 58876 - 59988 | 40160.2 |
| hypothetical protein | shim_00700 | Not Available | + | 60727 - 61716 | 36541.2 |
| hypothetical protein | shim_00710 | Not Available | + | 61765 - 62988 | 44926.4 |
| hypothetical protein | shim_00720 | Not Available | + | 63021 - 65471 | 87999.2 |
| 6-aminohexanoate-dimer hydrolase | shim_00730 | Not Available | - | 66448 - 67617 | 43080.7 |
| spermidine/putrescine-binding periplasmic protein precursor | shim_00740 | Not Available | - | 67770 - 68801 | 38331.6 |
| inner membrane abc transporter permease protein ydcv | shim_00750 | Not Available | - | 68850 - 69689 | 30684.3 |
| spermidine/putrescine transport system permease protein potb | shim_00760 | Not Available | - | 69682 - 70635 | 34995.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.