Hominimerdicola alba SY3

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Hominimerdicola

Description

Hominimerdicola alba SY3 is a Gram-positive, nonsporulating coccus that is classified as an anaerobic bacterium, primarily found in host-associated habitats. This microbe displays a spherical morphology typical of cocci, contributing to its classification within the broader group of cocci-shaped bacteria. The anaerobic nature of H. alba SY3 suggests that it thrives in environments where oxygen is limited, which is often characteristic of certain niches within host organisms, such as the gastrointestinal tract. The nonsporulating trait of H. alba SY3 indicates that it does not form spores, a feature that can influence its survival strategies and ecological interactions. As an anaerobe, it may play a role in the microbial communities of its host, potentially participating in metabolic processes that are essential for the host's health and homeostasis. Given its specific habitat and metabolic characteristics, Hominimerdicola alba SY3 may contribute to the complex interplay of microbial life in anaerobic environments, possibly influencing nutrient cycling and the overall microbial ecology within its host. Further research into its interactions and contributions within these systems could provide insights into its functional role and significance in host-associated microbiomes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusHominimerdicola
SpeciesHominimerdicola alba
StrainSY3

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Hominimerdicola alba SY3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hominimerdicola alba SY3


Gene Summary

Adenine Count

1168979 bp

Thymine Count

1165208 bp

Guanine Count

949536 bp

Cytosine Count

931682 bp

Genome Length

4286476 bp

Protein-coding Genes

3598 genes

Non-Coding Genes

153 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Numod4 motif hnh endonucleaseRASY3_01590Not Available+355153 - 35557516563.7
Putative portal proteinRASY3_01595Not Available+355572 - 35678645616.3
Hypothetical proteinRASY3_01600Not Available+356799 - 35834358730.1
Gp33RASY3_01615Not Available+358739 - 35906512250.7
Large terminaseRASY3_01620Not Available+359080 - 36049552412.9
Hypothetical proteinRASY3_01625Not Available+360555 - 36101617170.2
P22 coat protein 5RASY3_01630Not Available+361023 - 36212638667.4
Hypothetical proteinRASY3_01635Not Available+362130 - 36254914875.5
Gp43RASY3_01640Not Available+362524 - 36286512715.1
Hypothetical proteinRASY3_01645Not Available+362852 - 3631129215.01

Displaying genes 1 – 10 of 3751 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 237 metabolites