Sphingobium sp. TKS

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. TKS
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. TKS

NZ_CP005083.1NZ_CP005085.1NZ_CP005092.1NZ_CP005091.1NZ_CP005089.1NZ_CP005084.1NZ_CP005086.1NZ_CP005087.1NZ_CP005093.1NZ_CP005088.1NZ_CP005090.1

Gene Summary

Adenine Count

776115 bp

Thymine Count

780087 bp

Guanine Count

1350762 bp

Cytosine Count

1342893 bp

Genome Length

4249857 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

11

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+265945 - 265958Not Available
site-specific integraseK426_RS01290Not Available+269110 - 27045950487.4
hypothetical proteinK426_RS01295Not Available+270456 - 27224364746.2
integraseK426_RS01300Not Available+272240 - 27440279640.3
Putative ardc-like antirestriction proteinK426_RS01305Not Available+274572 - 27543831416.4
hypothetical proteinK426_RS32815Not Available-275523 - 2756544651.56
Putative ardc-like antirestriction proteinK426_RS30005Not Available+275814 - 2759936234.48
CysmK426_RS01315Not Available-276059 - 27698531336.8
hypothetical proteinK426_RS01320Not Available+277150 - 27741910008.9
Reverse transcriptaseK426_RS01325Not Available+278032 - 27995471929.9

Displaying genes 1 – 10 of 6105 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

31 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm00027912-oxopropyl-coenzyme MC5H9O4S2Chemical structure of 2-oxopropyl-coenzyme MNot available
Average197.24Da
Monoisotopic196.994774698Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0003212N(6)-acetyl-N(6)-hydroxy-L-lysineC8H16N2O4Chemical structure of N(6)-acetyl-N(6)-hydroxy-L-lysineNot available
Average204.226Da
Monoisotopic204.111007003Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003475(R)-2-hydroxypropyl-coenzyme MC5H11O4S2Chemical structure of (R)-2-hydroxypropyl-coenzyme MNot available
Average199.26Da
Monoisotopic199.0104248Da
BASm00035853''-O-adenylylstreptomycinC31H53N12O18PChemical structure of 3''-O-adenylylstreptomycinNot available
Average912.804Da
Monoisotopic912.332742753Da

Displaying 1–10 of 31 metabolites