Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | SAMN04488036_10473 | Not Available | + | 72387 - 73136 | 27910.5 |
| 2-octaprenylphenol hydroxylase | SAMN04488036_10474 | Not Available | + | 73190 - 74722 | 56258.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488036_10475 | Not Available | + | 74806 - 76566 | 64224.4 |
| hypothetical protein | SAMN04488036_10476 | Not Available | + | 76739 - 77074 | 12155.0 |
| uncharacterized protein involved in response to no | SAMN04488036_10477 | Not Available | + | 77195 - 78415 | 43419.4 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04488036_10478 | Not Available | - | 78512 - 79387 | 30789.0 |
| soluble lytic murein transglycosylase | SAMN04488036_10479 | Not Available | + | 79547 - 81499 | 71169.1 |
| hypothetical protein | SAMN04488036_10480 | Not Available | - | 81514 - 81993 | 17703.7 |
| biotin-(acetyl-coa carboxylase) ligase | SAMN04488036_10481 | Not Available | - | 81993 - 82718 | 25623.7 |
| atp-binding protein involved in chromosome partitioning | SAMN04488036_10482 | Not Available | - | 82715 - 83779 | 36828.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.