Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribose 5-phosphate isomerase b | SAMN04488036_10463 | Not Available | - | 59617 - 60051 | 15110.1 |
| hypothetical protein | SAMN04488036_10464 | Not Available | - | 60071 - 61384 | 47863.9 |
| dna gyrase subunit b | SAMN04488036_10465 | Not Available | - | 61703 - 64120 | 89417.4 |
| dna replication and repair protein recf | SAMN04488036_10466 | Not Available | - | 64215 - 65318 | 40097.7 |
| dna polymerase iii, beta subunit | SAMN04488036_10467 | Not Available | - | 65396 - 66514 | 40537.2 |
| chromosomal replication initiator protein | SAMN04488036_10468 | Not Available | - | 66690 - 68057 | 51392.6 |
| ssu ribosomal protein s20p | SAMN04488036_10469 | Not Available | - | 68711 - 68974 | 9684.82 |
| hypothetical protein | SAMN04488036_10470 | Not Available | - | 69225 - 70445 | 44736.5 |
| short chain enoyl-coa hydratase | SAMN04488036_10471 | Not Available | - | 70551 - 71327 | 27865.7 |
| dna-(apurinic or apyrimidinic site) lyase | SAMN04488036_10472 | Not Available | - | 71392 - 72243 | 31443.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.