Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488036_10453 | Not Available | - | 47666 - 48394 | 24946.0 |
| uncharacterized conserved protein, duf849 family | SAMN04488036_10454 | Not Available | - | 48520 - 49377 | 30515.6 |
| tigr03084 family protein | SAMN04488036_10455 | Not Available | - | 49378 - 50178 | 29159.3 |
| geranyl-coa carboxylase beta subunit | SAMN04488036_10456 | Not Available | - | 50182 - 51801 | 57162.5 |
| transcriptional regulator, paax family | SAMN04488036_10457 | Not Available | + | 51976 - 52746 | 28196.0 |
| dna-binding transcriptional regulator, lysr family | SAMN04488036_10458 | Not Available | + | 52751 - 53656 | 33097.9 |
| n-methylhydantoinase a | SAMN04488036_10459 | Not Available | + | 53750 - 55840 | 75231.9 |
| n-methylhydantoinase b | SAMN04488036_10460 | Not Available | + | 55833 - 57539 | 61056.8 |
| glycine/d-amino acid oxidase | SAMN04488036_10461 | Not Available | + | 57539 - 58759 | 45068.7 |
| uronate dehydrogenase | SAMN04488036_10462 | Not Available | + | 58781 - 59620 | 30239.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.