Shimia haliotis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia haliotis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth temperature of 29.0 °C. This microbe’s Gram-negative cell wall structure is indicative of its sensitivity to certain antibiotics and its ability to form a protective outer membrane, which may play a role in its environmental adaptability. The rod shape of S. haliotis suggests a possible motility mechanism, although specific motility traits are not provided. The optimal growth temperature of 29.0 °C indicates that S. haliotis is likely adapted to moderately warm environments, which may include specific ecological niches where such temperatures are prevalent. As an aerobic organism, it relies on oxygen for its metabolic processes, suggesting a potential role in nutrient cycling in environments rich in organic matter. The characteristics of S. haliotis may allow it to thrive in specific marine or freshwater environments, potentially contributing to the decomposition of organic materials or engaging in symbiotic relationships with other marine organisms. Further investigation into the ecological roles and interactions of Shimia haliotis could provide deeper insights into its contribution within its habitat, particularly in relation to nutrient dynamics and microbial community structure. Understanding these relationships may help elucidate the broader ecological significance of this bacterium in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia haliotis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia haliotis

Accession NumberFOSZ00000000.1

Gene Summary

Adenine Count

840910 bp

Thymine Count

835965 bp

Guanine Count

1149776 bp

Cytosine Count

1169318 bp

Genome Length

3995969 bp

Protein-coding Genes

1771 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcriptional regulator, tetr familySAMN04488036_10443Not Available-37019 - 3765123374.2
acyl-coa dehydrogenaseSAMN04488036_10444Not Available+37811 - 3899243394.4
acyl-coa dehydrogenaseSAMN04488036_10445Not Available+39003 - 4011838875.4
amino acid/amide abc transporter membrane protein 1, haat familySAMN04488036_10446Not Available+40268 - 4114330947.0
amino acid/amide abc transporter membrane protein 2, haat familySAMN04488036_10447Not Available+41149 - 4223439582.0
amino acid/amide abc transporter atp-binding protein 1, haat familySAMN04488036_10448Not Available+42231 - 4300128037.5
amino acid/amide abc transporter atp-binding protein 2, haat familySAMN04488036_10449Not Available+43001 - 4377428706.1
long-chain acyl-coa synthetaseSAMN04488036_10450Not Available+43797 - 4568070139.6
amino acid/amide abc transporter substrate-binding protein, haat familySAMN04488036_10451Not Available+45728 - 4688240689.6
meso-butanediol dehydrogenase / (s,s)-butanediol dehydrogenase / diacetyl reductaseSAMN04488036_10452Not Available-46935 - 4766925668.8

Displaying genes 41 – 50 of 1771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites