Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, tetr family | SAMN04488036_10443 | Not Available | - | 37019 - 37651 | 23374.2 |
| acyl-coa dehydrogenase | SAMN04488036_10444 | Not Available | + | 37811 - 38992 | 43394.4 |
| acyl-coa dehydrogenase | SAMN04488036_10445 | Not Available | + | 39003 - 40118 | 38875.4 |
| amino acid/amide abc transporter membrane protein 1, haat family | SAMN04488036_10446 | Not Available | + | 40268 - 41143 | 30947.0 |
| amino acid/amide abc transporter membrane protein 2, haat family | SAMN04488036_10447 | Not Available | + | 41149 - 42234 | 39582.0 |
| amino acid/amide abc transporter atp-binding protein 1, haat family | SAMN04488036_10448 | Not Available | + | 42231 - 43001 | 28037.5 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN04488036_10449 | Not Available | + | 43001 - 43774 | 28706.1 |
| long-chain acyl-coa synthetase | SAMN04488036_10450 | Not Available | + | 43797 - 45680 | 70139.6 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN04488036_10451 | Not Available | + | 45728 - 46882 | 40689.6 |
| meso-butanediol dehydrogenase / (s,s)-butanediol dehydrogenase / diacetyl reductase | SAMN04488036_10452 | Not Available | - | 46935 - 47669 | 25668.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.