Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488036_10433 | Not Available | + | 30093 - 30803 | 26241.5 |
| uncharacterized conserved protein, mapeg superfamily | SAMN04488036_10434 | Not Available | + | 30950 - 31348 | 14423.1 |
| transcriptional regulator, lysr family | SAMN04488036_10435 | Not Available | - | 31414 - 32286 | 31524.1 |
| uncharacterized conserved protein, duf1330 family | SAMN04488036_10436 | Not Available | + | 32384 - 32665 | 9815.65 |
| wgr domain-containing protein | SAMN04488036_10437 | Not Available | + | 32729 - 32956 | 8713.56 |
| n-carbamoyl-l-amino-acid hydrolase | SAMN04488036_10438 | Not Available | - | 32953 - 34152 | 42525.1 |
| broad specificity phosphatase phoe | SAMN04488036_10439 | Not Available | + | 34313 - 34972 | 24773.4 |
| uncharacterized conserved protein, contains zn-finger domain | SAMN04488036_10440 | Not Available | - | 34979 - 35161 | 6794.9 |
| abc-2 type transport system atp-binding protein | SAMN04488036_10441 | Not Available | + | 35268 - 36200 | 33962.2 |
| protein of unknown function | SAMN04488036_10442 | Not Available | - | 36462 - 36941 | 17480.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.