Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-4 | SAMN04488036_10411 | Not Available | + | 11655 - 12908 | 46090.1 |
| hypothetical protein | SAMN04488036_10412 | Not Available | + | 12991 - 13185 | 7264.76 |
| hypothetical protein | SAMN04488036_10413 | Not Available | + | 13280 - 13489 | 6953.55 |
| hypothetical protein | SAMN04488036_10414 | Not Available | + | 13526 - 13768 | 8401.37 |
| n-formylglutamate amidohydrolase | SAMN04488036_10415 | Not Available | - | 13772 - 14635 | 31491.5 |
| lsu ribosomal protein l36p | SAMN04488036_10417 | Not Available | + | 14936 - 15061 | 5054.36 |
| predicted metal-binding protein | SAMN04488036_10419 | Not Available | + | 15667 - 16020 | 12432.7 |
| iron complex transport system atp-binding protein | SAMN04488036_10420 | Not Available | + | 16017 - 16799 | 27940.9 |
| iron complex transport system substrate-binding protein | SAMN04488036_10421 | Not Available | + | 16796 - 17758 | 34787.8 |
| iron complex transport system permease protein | SAMN04488036_10422 | Not Available | + | 17760 - 18767 | 34739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.