Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pin domain-containing protein | SAMN04488036_11516 | Not Available | + | 1798639 - 1799217 | 21935.2 |
| n-6 dna methylase | SAMN04488036_11517 | Not Available | + | 1799348 - 1800154 | 30077.2 |
| hypothetical protein | SAMN04488036_11518 | Not Available | + | 1800650 - 1800928 | 10633.4 |
| mobilisation protein (mobc) | SAMN04488036_11519 | Not Available | + | 1801616 - 1802020 | 14983.5 |
| hypothetical protein | SAMN04488036_11520 | Not Available | + | 1802017 - 1803489 | 56201.8 |
| type iv secretory pathway, vird4 component, trag/trad family atpase | SAMN04488036_11521 | Not Available | + | 1803650 - 1805113 | 54120.4 |
| hypothetical protein | SAMN04488036_11522 | Not Available | + | 1805110 - 1806135 | 36298.1 |
| type iv secretory system conjugative dna transfer | SAMN04488036_1161 | Not Available | - | 1806191 - 1807278 | 39606.3 |
| mobilisation protein (mobc) | SAMN04488036_1162 | Not Available | + | 1807476 - 1807835 | 13114.8 |
| relaxase/mobilisation nuclease domain-containing protein | SAMN04488036_1163 | Not Available | + | 1807804 - 1809081 | 49497.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.