Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abortive infection bacteriophage resistance protein | SAMN04488036_1156 | Not Available | + | 1788668 - 1789570 | 35156.4 |
| type i restriction enzyme, r subunit | SAMN04488036_1157 | Not Available | + | 1789741 - 1792572 | 108417.0 |
| hypothetical protein | SAMN04488036_1158 | Not Available | + | 1792611 - 1793327 | 27157.8 |
| hypothetical protein | SAMN04488036_1159 | Not Available | + | 1793320 - 1793568 | 9261.43 |
| initiator replication protein | SAMN04488036_11510 | Not Available | - | 1793583 - 1794950 | 51751.1 |
| toprim-like | SAMN04488036_11511 | Not Available | - | 1795557 - 1796501 | 35033.3 |
| protein of unknown function | SAMN04488036_11512 | Not Available | + | 1796813 - 1797064 | 9828.11 |
| hypothetical protein | SAMN04488036_11513 | Not Available | + | 1797128 - 1797463 | 11978.3 |
| hypothetical protein | SAMN04488036_11514 | Not Available | - | 1797779 - 1798027 | 8316.82 |
| dna binding domain-containing protein, excisionase family | SAMN04488036_11515 | Not Available | + | 1798178 - 1798642 | 16703.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.