Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sel1 repeat-containing protein | SAMN04488036_11413 | Not Available | + | 1750077 - 1751135 | 38384.5 |
| pas/pac sensor hybrid histidine kinase | SAMN04488036_11414 | Not Available | - | 1751180 - 1753678 | 91209.5 |
| hypothetical protein | SAMN04488036_11415 | Not Available | - | 1753709 - 1754230 | 18803.5 |
| two component transcriptional regulator, luxr family | SAMN04488036_11416 | Not Available | + | 1754459 - 1755175 | 25495.8 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN04488036_11417 | Not Available | - | 1755196 - 1757805 | 88381.5 |
| gdp-mannose 6-dehydrogenase | SAMN04488036_11418 | Not Available | - | 1757844 - 1759238 | 49972.9 |
| mannose-1-phosphate guanylyltransferase (gdp) /mannose-6-phosphate isomerase, type 2 | SAMN04488036_11419 | Not Available | - | 1759461 - 1760876 | 51635.7 |
| glycosyltransferase alg8 | SAMN04488036_11420 | Not Available | - | 1760978 - 1762564 | 61570.8 |
| multidrug resistance efflux pump | SAMN04488036_11421 | Not Available | - | 1762557 - 1763981 | 51866.0 |
| hth-like domain-containing protein | SAMN04488036_11422 | Not Available | + | 1764649 - 1765215 | 21589.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.