Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_104123 | Not Available | + | 130630 - 131862 | 45581.8 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_104124 | Not Available | + | 131867 - 132937 | 38627.3 |
| probable phosphoglycerate mutase | SAMN04488036_104125 | Not Available | + | 132934 - 133521 | 21783.7 |
| predicted glycosyl transferase | SAMN04488036_104126 | Not Available | + | 133518 - 134660 | 40002.3 |
| hypothetical protein | SAMN04488036_104127 | Not Available | + | 134657 - 135409 | 27971.3 |
| s-adenosyl-l-methionine methyltransferase | SAMN04488036_104128 | Not Available | + | 135406 - 135882 | 17653.2 |
| putative protease | SAMN04488036_104129 | Not Available | - | 135951 - 137606 | 62778.9 |
| sulfite exporter taue/safe | SAMN04488036_104130 | Not Available | - | 137741 - 138496 | 26529.5 |
| sulfotransferase family protein | SAMN04488036_104131 | Not Available | - | 138557 - 139375 | 31431.2 |
| core-2/i-branching enzyme | SAMN04488036_104132 | Not Available | + | 139524 - 141101 | 61342.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.