Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| wd-40 repeat-containing protein | SAMN04488036_10493 | Not Available | + | 94014 - 95309 | 46976.3 |
| hypothetical protein | SAMN04488036_10494 | Not Available | + | 95312 - 95437 | 4076.96 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04488036_10495 | Not Available | + | 95442 - 96824 | 50877.3 |
| hamp domain-containing protein | SAMN04488036_10496 | Not Available | + | 96817 - 98799 | 72458.1 |
| multicopper oxidase with three cupredoxin domains (includes cell division protein ftsp and spore coat protein cota) | SAMN04488036_10497 | Not Available | + | 98814 - 100190 | 50132.4 |
| transcriptional regulator, arac family with amidase-like domain | SAMN04488036_10498 | Not Available | - | 100183 - 101133 | 34829.0 |
| dna-binding transcriptional regulator, gntr family | SAMN04488036_10499 | Not Available | + | 101245 - 101955 | 26172.3 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04488036_104100 | Not Available | + | 101965 - 102882 | 33389.3 |
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | SAMN04488036_104101 | Not Available | + | 102886 - 104382 | 53685.7 |
| glycine/d-amino acid oxidase | SAMN04488036_104102 | Not Available | + | 104379 - 105719 | 47974.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.