Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10483 | Not Available | - | 83780 - 83980 | 7180.62 |
| hypothetical protein | SAMN04488036_10484 | Not Available | + | 84049 - 84792 | 26262.7 |
| 4fe-4s dicluster domain-containing protein | SAMN04488036_10485 | Not Available | - | 84786 - 86747 | 69323.4 |
| protein of unknown function | SAMN04488036_10486 | Not Available | + | 87062 - 87613 | 20543.2 |
| protein of unknown function | SAMN04488036_10487 | Not Available | + | 87610 - 88215 | 22384.2 |
| chaperone tord involved in molybdoenzyme tora maturation | SAMN04488036_10488 | Not Available | + | 88212 - 88820 | 21897.1 |
| formate dehydrogenase region tat target | SAMN04488036_10489 | Not Available | + | 88873 - 89067 | 6739.81 |
| formate dehydrogenase alpha subunit | SAMN04488036_10490 | Not Available | + | 89175 - 92069 | 107336.0 |
| formate dehydrogenase beta subunit | SAMN04488036_10491 | Not Available | + | 92082 - 92675 | 21282.3 |
| formate dehydrogenase gamma subunit | SAMN04488036_10492 | Not Available | + | 92805 - 94013 | 44057.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.