Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10423 | Not Available | - | 18764 - 19057 | 10981.3 |
| phenylacetate-coa ligase | SAMN04488036_10424 | Not Available | - | 19197 - 20417 | 42723.1 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN04488036_10425 | Not Available | - | 20556 - 21371 | 29978.1 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN04488036_10426 | Not Available | - | 21447 - 22730 | 46064.4 |
| amino acid/amide abc transporter membrane protein 2, haat family (tc 3.a.1.4.-) | SAMN04488036_10427 | Not Available | - | 22809 - 23885 | 39281.0 |
| hypothetical protein | SAMN04488036_10428 | Not Available | - | 23885 - 24142 | 9327.15 |
| amino acid/amide abc transporter membrane protein 1, haat family (tc 3.a.1.4.-) | SAMN04488036_10429 | Not Available | - | 24148 - 25152 | 36227.3 |
| amino acid/amide abc transporter atp-binding protein 1, haat family | SAMN04488036_10430 | Not Available | - | 25194 - 26009 | 30185.6 |
| long-chain acyl-coa synthetase | SAMN04488036_10431 | Not Available | - | 26006 - 28090 | 77550.8 |
| signal transduction histidine kinase | SAMN04488036_10432 | Not Available | + | 28172 - 30085 | 70202.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.