Flavobacterium akiainvivens str. IK-1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium akiainvivens str. IK-1 is a Gram-negative, rod-shaped bacterium that is part of the diverse genus Flavobacterium, known for its ecological significance in various environments. This strain exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its interaction with the environment and other organisms. The rod shape of Flavobacterium akiainvivens str. IK-1 is typical of many members in the Flavobacteriaceae family, contributing to its motility and adaptability in aquatic habitats. Although specific metabolic capabilities or ecological roles are not detailed in the provided information, members of the Flavobacterium genus are often involved in the degradation of organic matter, suggesting that strain IK-1 may play a role in nutrient cycling in its native habitat. Further research into Flavobacterium akiainvivens str. IK-1 could elucidate its interactions within microbial communities and its potential applications in bioremediation or wastewater treatment, reinforcing the importance of Gram-negative, rod-shaped bacteria in environmental microbiology. These characteristics underscore the ecological importance of Flavobacterium species in maintaining the health and stability of aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium akiainvivens
StrainIK-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Flavobacterium akiainvivens str. IK-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium akiainvivens str. IK-1


Gene Summary

Adenine Count

1268209 bp

Thymine Count

1277821 bp

Guanine Count

992722 bp

Cytosine Count

992006 bp

Genome Length

4533022 bp

Protein-coding Genes

3841 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+6 - 2881Not Available
Trna-alaNot AvailableNot Available+108 - 184Not Available
Trna-ileNot AvailableNot Available+291 - 367Not Available
16s ribosomal rnaNot AvailableNot Available+459 - 1983Not Available
5s ribosomal rnaNot AvailableNot Available+3023 - 3131Not Available
hypothetical proteinAM493_00030Not Available+5498 - 8820119854.0
atp-binding proteinAM493_00035Not Available-9239 - 998528615.5
transposaseAM493_00040Not Available-10012 - 1155359192.4
beta-glucuronidaseAM493_00045T2KPJ7+11830 - 1369271733.8
cytochrome c oxidase subunit iiAM493_00050Not Available+14202 - 1458814434.3

Displaying genes 1 – 10 of 3902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

151 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 151 metabolites