Helicobacter pylori PeCan18

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori PeCan18 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its host-associated habitat. As a member of the Helicobacter genus, H. pylori PeCan18 is commonly found in the gastric mucosa of humans and other mammals, where it can adapt to the acidic environment of the stomach. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, which is indicative of its specialized niche within host organisms. Research on Helicobacter species has often highlighted their unique adaptations to the gastrointestinal tract, including mechanisms that enable them to survive in hostile conditions. Understanding the traits of H. pylori PeCan18 could provide valuable insights into its ecological roles and interactions within the host environment. The ability of this strain to thrive under microaerophilic conditions suggests it may play a significant role in influencing local microbiota dynamics and host health, potentially impacting gastric physiology and the broader microbial ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainPeCan18

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori PeCan18
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori PeCan18


Gene Summary

Adenine Count

502467 bp

Thymine Count

510245 bp

Guanine Count

323912 bp

Cytosine Count

324061 bp

Genome Length

1660685 bp

Protein-coding Genes

1537 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcription antitermination factor nusbHPPC18_RS00005Not Available-11 - 42715522.0
6,7-dimethyl-8-ribityllumazine synthaseHPPC18_RS00010Not Available-429 - 89916927.6
3-deoxy-8-phosphooctulonate synthaseHPPC18_RS00015Not Available-909 - 173930209.4
carbonic anhydraseHPPC18_RS00020Not Available-1726 - 239125735.7
orotidine-5'-phosphate decarboxylaseHPPC18_RS00025Not Available+2513 - 319625211.9
pantoate--beta-alanine ligaseHPPC18_RS00030Not Available+3197 - 402731146.9
Trna-gluNot AvailableNot Available+4041 - 4116Not Available
Trna-aspNot AvailableNot Available+4176 - 4252Not Available
Trna-valNot AvailableNot Available+4303 - 4378Not Available
Trna-gluNot AvailableNot Available+4421 - 4495Not Available

Displaying genes 1 – 10 of 1582 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

24 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–10 of 24 metabolites