Helicobacter pylori Shi169

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori Shi169 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism optimally thrives at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe. H. pylori strains are typically found in the gastric mucosa of their hosts, where they may play a role in various physiological and pathological processes. The microaerophilic nature of H. pylori Shi169 suggests that it requires lower levels of oxygen for growth compared to atmospheric conditions, indicating a specialized adaptation to its environment within the host's stomach. The ability to maintain viability and function in such unique oxygen levels may influence its interactions with host immune responses and gastric microenvironments. Understanding the specific traits of H. pylori Shi169 sheds light on its ecological niche within the gastric ecosystem and highlights the importance of microaerophilic conditions for its survival and potential metabolic activities. Further investigation into the physiological roles of this strain could provide insights into its contributions to host gastric health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainShi169

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori Shi169
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori Shi169


Gene Summary

Adenine Count

491051 bp

Thymine Count

497465 bp

Guanine Count

312900 bp

Cytosine Count

315493 bp

Genome Length

1616909 bp

Protein-coding Genes

1520 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcription antitermination factor nusbHPSH169_RS00005Not Available-11 - 42715520.0
6,7-dimethyl-8-ribityllumazine synthaseHPSH169_RS00010Not Available-429 - 89916938.6
3-deoxy-8-phosphooctulonate synthaseHPSH169_RS00015Not Available-909 - 173930284.5
duf3226 domain-containing proteinHPSH169_RS07835Not Available-1726 - 239125614.6
orotidine-5'-phosphate decarboxylaseHPSH169_RS00030Not Available+2514 - 319725296.0
pantoate--beta-alanine ligaseHPSH169_RS00035Not Available+3198 - 402831155.0
Trna-gluNot AvailableNot Available+4042 - 4117Not Available
Trna-aspNot AvailableNot Available+4181 - 4257Not Available
Trna-valNot AvailableNot Available+4293 - 4368Not Available
Trna-gluNot AvailableNot Available+4410 - 4484Not Available

Displaying genes 1 – 10 of 1565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0005184dihydrourocanateC6H7N2O2Chemical structure of dihydrourocanateNot available
Average139.135Da
Monoisotopic139.051301053Da

Displaying 1–10 of 13 metabolites