Sulfuricella denitrificans skB26

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sulfuricellaceae

Genus

Sulfuricella

Description

**Sulfuricella denitrificans skB26** is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This organism exhibits unique metabolic capabilities, enabling it to participate in biogeochemical cycles involving sulfur and nitrogen. The rod shape of S. denitrificans skB26 suggests a structural adaptation that may facilitate its movement and colonization in specific environments, potentially including cold marine habitats where such temperatures are prevalent. The Gram-negative nature of this microbe indicates that it possesses a characteristic outer membrane, which may influence its interactions with other microorganisms and its resilience to various environmental stresses. Furthermore, the ecological role of S. denitrificans skB26 may extend to its involvement in denitrification processes, contributing to the nitrogen cycle by converting nitrates into nitrogen gas under anaerobic conditions. This function is crucial in reducing excess nitrogen in aquatic and terrestrial ecosystems, thereby mitigating issues related to eutrophication and maintaining ecosystem balance. The specific adaptation of S. denitrificans skB26 to cooler temperatures highlights its potential significance in cold biomes, where it may play a vital role in nutrient cycling and the overall health of these ecosystems. Understanding its metabolic pathways could provide insights into the ecological dynamics and microbial interactions in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySulfuricellaceae
GenusSulfuricella
SpeciesSulfuricella denitrificans
StrainskB26

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sulfuricella denitrificans skB26


Gene Summary

Adenine Count

19176 bp

Thymine Count

18308 bp

Guanine Count

24347 bp

Cytosine Count

24788 bp

Genome Length

86619 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiation proteinSCD_RS15030Not Available-2 - 78129578.5
para family proteinSCD_RS16260Not Available+1252 - 206729758.2
parb/repb/spo0j family partition proteinSCD_RS15035Not Available+2069 - 295333419.2
lexa family proteinSCD_RS15040Not Available+4023 - 460121137.5
y-family dna polymeraseSCD_RS15045Not Available+4598 - 587246958.1
sos response-associated peptidaseSCD_RS15050Not Available+5917 - 658224872.1
hypothetical proteinSCD_RS15055Not Available-6895 - 729614825.8
hypothetical proteinSCD_RS15065Not Available+7729 - 843026754.3
hypothetical proteinSCD_RS15070Not Available+8430 - 945538116.8
helix-turn-helix transcriptional regulatorSCD_RS15075Not Available-10270 - 1054510444.1

Displaying genes 1 – 10 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

87 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da

Displaying 1–10 of 87 metabolites