Pseudothermotoga hypogea DSM 11164 = NBRC 106472

anaerobic

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Pseudothermotoga

Description

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusPseudothermotoga
SpeciesPseudothermotoga hypogea
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudothermotoga hypogea DSM 11164 = NBRC 106472

Accession NumberNZ_CP007141.1

Gene Summary

Adenine Count

544842 bp

Thymine Count

549276 bp

Guanine Count

528467 bp

Cytosine Count

542831 bp

Genome Length

2165416 bp

Protein-coding Genes

2105 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter substrate-binding proteinAJ81_RS10920Not Available+13 - 83130370.8
abc transporter permeaseAJ81_RS00005Not Available+788 - 156128954.6
abc transporter atp-binding proteinAJ81_RS00010Not Available+1545 - 224326648.9
undecaprenyl phosphate translocase family proteinAJ81_RS00015Not Available+2243 - 334639935.2
anaerobic ribonucleoside-triphosphate reductase activating proteinAJ81_RS00020Q58624-3350 - 402425529.0
ribonucleoside triphosphate reductaseAJ81_RS00025P43752-4021 - 583569168.4
3'-5' exoribonuclease yham family proteinAJ81_RS00030B7IK95+6050 - 709339822.1
phosphoglucomutase/phosphomannomutase family proteinAJ81_RS00035Q68BJ6+7083 - 849252730.3
type i dna topoisomeraseAJ81_RS00040O34204+8497 - 1066583754.6
d-alanine--d-alanine ligaseAJ81_RS00045A8F8C8+10662 - 1155533473.9

Displaying genes 1 – 10 of 2157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

120 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0009321beta-D-fructose 1-phosphateC6H11O9PChemical structure of beta-D-fructose 1-phosphateNot available
Average258.12Da
Monoisotopic258.015166092Da
BASm0009720apulose 4-phosphateC5H9O8PChemical structure of apulose 4-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0009903cyclic hexaadenylateC60H66N30O36P6Chemical structure of cyclic hexaadenylateNot available
Average1969.208Da
Monoisotopic1968.271462Da
BASm00100445'-pApG-3'C20H23N10O14P2Chemical structure of 5'-pApG-3'Not available
Average689.409Da
Monoisotopic689.088690196Da
BASm00100455'-ApG-3'C20H24N10O11PChemical structure of 5'-ApG-3'Not available
Average611.445Da
Monoisotopic611.136912211Da
BASm00101116-sulfo-alpha-D-quinovoseC6H11O8SChemical structure of 6-sulfo-alpha-D-quinovoseNot available
Average243.21Da
Monoisotopic243.0180121Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da
BASm0010825N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideC8H13N2O9PChemical structure of N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average312.172Da
Monoisotopic312.0369642Da
BASm00108262-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineC8H15N3O8PChemical structure of 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineNot available
Average312.195Da
Monoisotopic312.060225Da
BASm0012597(6R)-10-formyltetrahydrofolateC20H21N7O7Chemical structure of (6R)-10-formyltetrahydrofolateNot available
Average471.431Da
Monoisotopic471.151343204Da

Displaying 111–120 of 120 metabolites