Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| proline racemase family protein | M5M_RS03755 | Q485S0 | + | 828388 - 829404 | 36456.7 |
| xaa-pro peptidase family protein | M5M_RS03760 | P54518 | + | 829401 - 830570 | 42650.9 |
| ornithine cyclodeaminase family protein | M5M_RS03765 | Q485R8 | + | 830576 - 831520 | 34539.5 |
| mfs transporter | M5M_RS03770 | Not Available | + | 831517 - 833199 | 62631.7 |
| collagenase | M5M_RS03775 | Q8D4Y9 | - | 833234 - 834154 | 34815.6 |
| gntr family transcriptional regulator | M5M_RS03780 | Not Available | - | 834218 - 834874 | 24391.5 |
| 4-hydroxyproline epimerase | M5M_RS03785 | A3QFI1 | - | 835033 - 836034 | 36093.2 |
| dihydrodipicolinate synthase family protein | M5M_RS03790 | A8EYZ4 | - | 836069 - 836980 | 33359.9 |
| fad-binding oxidoreductase | M5M_RS03795 | Not Available | + | 837103 - 838359 | 45722.1 |
| imidazolonepropionase | M5M_RS03800 | Q15X43 | + | 838410 - 839609 | 42374.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.