Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 3 protein | M5M_RS20880 | T2KMH0 | + | 4278088 - 4279341 | 45601.5 |
| abc transporter transmembrane domain-containing protein | M5M_RS20885 | Not Available | + | 4279233 - 4279745 | 18351.2 |
| putative glycoside hydrolase | M5M_RS20890 | Not Available | + | 4279920 - 4280417 | 17438.7 |
| methylglyoxal synthase | M5M_RS19130 | B3PFP8 | - | 4280472 - 4280930 | 16804.2 |
| l-fucose:h+ symporter permease | M5M_RS19135 | Not Available | - | 4281129 - 4282412 | 45436.3 |
| glucose-6-phosphate dehydrogenase | M5M_RS19140 | Q9Z3S2 | + | 4282792 - 4284228 | 53362.5 |
| 6-phosphogluconolactonase | M5M_RS19145 | Q9PEG5 | + | 4284232 - 4284918 | 24253.2 |
| phosphogluconate dehydratase | M5M_RS19150 | P31961 | + | 4284961 - 4286820 | 65254.5 |
| glucokinase | M5M_RS19155 | Q7P1R6 | + | 4286817 - 4287815 | 35186.6 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | M5M_RS19160 | P38448 | + | 4287838 - 4288470 | 21611.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.