Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | M5M_RS17630 | P82974 | + | 3952628 - 3953218 | 21895.6 |
| signaling modulator of ampd, ampe | M5M_RS17635 | Not Available | + | 3953225 - 3954097 | 32018.7 |
| hypothetical protein | M5M_RS17640 | Not Available | - | 3954072 - 3955016 | 34376.1 |
| yajq family cyclic di-gmp-binding protein | M5M_RS17645 | B3PLN2 | + | 3955192 - 3955674 | 17975.0 |
| abc transporter permease | M5M_RS17650 | Not Available | - | 3955808 - 3956791 | 36223.0 |
| abc transporter atp-binding protein | M5M_RS17655 | Q1BWI2 | - | 3956810 - 3957688 | 32709.5 |
| ampg family muropeptide mfs transporter | M5M_RS17660 | Q1RIL0 | + | 3957795 - 3959303 | 55612.7 |
| mgmt family protein | M5M_RS17665 | P0AFP2 | - | 3959310 - 3959618 | 11067.6 |
| duf481 domain-containing protein | M5M_RS17670 | Not Available | + | 3959684 - 3960703 | 38241.3 |
| fxsa family protein | M5M_RS17675 | P37147 | + | 3960888 - 3961295 | 14637.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.