Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | M5M_RS16880 | P38100 | + | 3786130 - 3789351 | 117292.0 |
| transcription elongation factor grea | M5M_RS16885 | Q9HV46 | + | 3789348 - 3789824 | 17425.8 |
| class ii 3-deoxy-7-phosphoheptulonate synthase | M5M_RS16890 | A0A067XGX8 | - | 3789917 - 3791257 | 49683.0 |
| amino acid aminotransferase | M5M_RS16895 | P44425 | - | 3791379 - 3792575 | 43081.7 |
| marr family winged helix-turn-helix transcriptional regulator | M5M_RS16900 | Not Available | - | 3792579 - 3793076 | 19029.8 |
| nitroreductase family protein | M5M_RS16905 | F4KU78 | + | 3793240 - 3793920 | 25472.4 |
| tryptophan 2,3-dioxygenase | M5M_RS16910 | A9B4J6 | + | 3793929 - 3794732 | 31517.4 |
| aminotransferase class v-fold plp-dependent enzyme | M5M_RS16915 | Not Available | + | 3794773 - 3795963 | 43633.9 |
| tetratricopeptide repeat protein | M5M_RS16920 | Not Available | - | 3795976 - 3796713 | 27926.4 |
| histidinol-phosphate transaminase | M5M_RS16925 | Q47AL9 | + | 3796828 - 3797898 | 39368.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.