Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alpha | M5M_RS15680 | Q54M22 | - | 3472518 - 3473693 | 43580.2 |
| nadp-dependent phosphogluconate dehydrogenase | M5M_RS15685 | P53319 | + | 3474049 - 3475578 | 55651.3 |
| pas domain-containing methyl-accepting chemotaxis protein | M5M_RS15690 | Q9I3F6 | + | 3475741 - 3477315 | 55815.4 |
| transporter substrate-binding domain-containing protein | M5M_RS15695 | Not Available | + | 3477317 - 3478075 | 29002.8 |
| duf4382 domain-containing protein | M5M_RS15700 | Not Available | + | 3478149 - 3479996 | 65501.9 |
| histone deacetylase family protein | M5M_RS15705 | P72702 | - | 3480222 - 3481139 | 33423.6 |
| gnat family n-acetyltransferase | M5M_RS15710 | P38942 | - | 3481136 - 3482974 | 67601.4 |
| dipeptidyl-peptidase 3 family protein | M5M_RS15715 | Q8L831 | - | 3483093 - 3484775 | 62079.8 |
| hypothetical protein | M5M_RS15720 | Not Available | - | 3484839 - 3485738 | 33650.2 |
| atp-binding protein | M5M_RS19710 | Not Available | + | 3485897 - 3489682 | 138153.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.