Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| vacb/rnase ii family 3'-5' exoribonuclease | M5M_RS04910 | Q2NST6 | + | 1088275 - 1090233 | 71751.4 |
| rna polymerase sigma factor rpos | M5M_RS04915 | P45684 | - | 1090288 - 1091298 | 38275.7 |
| peptidoglycan dd-metalloendopeptidase family protein | M5M_RS04920 | P45682 | - | 1091492 - 1092298 | 29507.6 |
| duf368 domain-containing protein | M5M_RS04925 | Not Available | - | 1092386 - 1093348 | 34870.5 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | M5M_RS04930 | Q21LB7 | - | 1093362 - 1094003 | 23651.7 |
| trna pseudouridine(13) synthase trud | M5M_RS04935 | B3PJA9 | - | 1094097 - 1095056 | 36105.0 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | M5M_RS04940 | B3PJB0 | - | 1095053 - 1095532 | 16894.5 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | M5M_RS04945 | Q604M2 | - | 1095532 - 1096233 | 24947.0 |
| cell division protein ftsb | M5M_RS04950 | C5BMS3 | - | 1096230 - 1096523 | 11489.1 |
| phosphopyruvate hydratase | M5M_RS04955 | B3PJB3 | - | 1096604 - 1097896 | 45703.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.