Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | M5M_RS04700 | Q21KT3 | - | 1044880 - 1045992 | 40112.5 |
| rodz domain-containing protein | M5M_RS04705 | Not Available | - | 1046020 - 1046910 | 32010.8 |
| type iv pilus biogenesis/stability protein pilw | M5M_RS04710 | Not Available | - | 1046943 - 1047701 | 28864.4 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | M5M_RS04715 | Q21KT6 | - | 1047713 - 1048870 | 42961.8 |
| nucleoside-diphosphate kinase | M5M_RS04720 | A5VYT1 | - | 1048898 - 1049323 | 15171.2 |
| sufe family protein | M5M_RS04725 | Q52742 | - | 1049461 - 1049871 | 15049.2 |
| putative fe-s cluster assembly protein suft | M5M_RS04730 | A0A0H2XI17 | - | 1049890 - 1050417 | 19157.9 |
| iron-sulfur cluster assembly accessory protein | M5M_RS04735 | P77667 | - | 1050417 - 1050776 | 12655.1 |
| aminotransferase class v-fold plp-dependent enzyme | M5M_RS04740 | Q9KPQ7 | - | 1050786 - 1052009 | 43707.9 |
| fe-s cluster assembly protein sufd | M5M_RS04745 | P77689 | - | 1052006 - 1053232 | 44688.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.