Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tfp pilus assembly protein, major pilin pila | M5M_RS04455 | Not Available | - | 988629 - 989483 | 31717.0 |
| paar domain-containing protein | M5M_RS19830 | Not Available | - | 989528 - 989821 | 9243.44 |
| duf6931 family protein | M5M_RS04460 | Not Available | - | 989814 - 990428 | 21961.9 |
| type vi secretion system vgr family protein | M5M_RS04465 | Q9I0F3 | - | 990437 - 992323 | 69641.0 |
| type vi secretion system tube protein hcp | M5M_RS04470 | Not Available | - | 992450 - 992938 | 17153.2 |
| duf2339 domain-containing protein | M5M_RS04475 | Not Available | - | 993303 - 995882 | 94541.4 |
| trna adenosine(34) deaminase tada | M5M_RS04480 | P68398 | - | 995914 - 996417 | 18129.8 |
| putative rna methyltransferase | M5M_RS04485 | P36999 | - | 996407 - 997228 | 30248.5 |
| duf1653 domain-containing protein | M5M_RS04490 | Not Available | - | 997210 - 997455 | 9379.21 |
| ferredoxin--nadp reductase | M5M_RS04495 | Q44532 | - | 997534 - 998310 | 29347.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.