Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system membrane subunit tssm | M5M_RS04405 | Q9I755 | + | 973181 - 976717 | 133075.0 |
| type vi secretion system-associated protein tagf | M5M_RS19315 | Not Available | + | 976714 - 977376 | 24774.0 |
| type vi secretion system protein tssa | M5M_RS04415 | Q9I750 | + | 977602 - 978843 | 44784.4 |
| type vi secretion system contractile sheath small subunit | M5M_RS04420 | Q9I749 | + | 978892 - 979410 | 19376.0 |
| type vi secretion system contractile sheath large subunit | M5M_RS04425 | Not Available | + | 979413 - 980900 | 54985.1 |
| type vi secretion system contractile sheath large subunit | M5M_RS04430 | Not Available | + | 980964 - 982475 | 57121.9 |
| type vi secretion system baseplate subunit tsse | M5M_RS04435 | Not Available | + | 982477 - 982950 | 17936.8 |
| type vi secretion system baseplate subunit tssf | M5M_RS04440 | Q9I744 | + | 982947 - 984776 | 68264.3 |
| type vi secretion system baseplate subunit tssg | M5M_RS04445 | Not Available | + | 984740 - 985882 | 42671.7 |
| type vi secretion system atpase tssh | M5M_RS04450 | Q9I742 | + | 985892 - 988543 | 96892.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.