Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M5M_RS04255 | Not Available | - | 925764 - 926372 | 22394.2 |
| type iv pilus biogenesis protein pilm | M5M_RS04260 | Not Available | - | 926369 - 927295 | 33696.7 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | M5M_RS04265 | Q21LN7 | + | 927464 - 927928 | 17234.7 |
| flavodoxin domain-containing protein | M5M_RS04270 | P58208 | + | 927971 - 928417 | 16032.8 |
| flavodoxin fldb | M5M_RS04275 | P0A1N7 | + | 928387 - 928935 | 20723.1 |
| mapeg family protein | M5M_RS04280 | P64516 | - | 928948 - 929349 | 14362.5 |
| bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | M5M_RS04285 | Q1IDB9 | + | 929408 - 931426 | 73043.9 |
| late competence development comfb family protein | M5M_RS04290 | Not Available | + | 931478 - 931780 | 11622.6 |
| duf502 domain-containing protein | M5M_RS04295 | Not Available | - | 931777 - 932388 | 21709.1 |
| glutaminyl-peptide cyclotransferase | M5M_RS04300 | Q84WV9 | + | 932414 - 933193 | 29172.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.