Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carboxy-s-adenosyl-l-methionine synthase cmoa | M5M_RS03960 | Q21JL6 | + | 871471 - 872205 | 27409.1 |
| trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmob | M5M_RS03965 | Q21JL7 | + | 872202 - 873179 | 37144.6 |
| methylated-dna--[protein]-cysteine s-methyltransferase | M5M_RS20940 | Q8TI34 | - | 873214 - 873714 | 17632.1 |
| ada metal-binding domain-containing protein | M5M_RS03975 | P9WJW2 | - | 873711 - 875114 | 50953.2 |
| flavodoxin | M5M_RS03980 | P44562 | - | 875176 - 875718 | 19815.0 |
| abc transporter transmembrane domain-containing protein | M5M_RS03985 | P15043 | + | 875966 - 877756 | 66456.4 |
| helix-turn-helix domain-containing protein | M5M_RS20640 | Not Available | + | 877802 - 878083 | 10305.3 |
| s-formylglutathione hydrolase | M5M_RS03990 | B1X7P2 | - | 878093 - 878932 | 30522.2 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | M5M_RS03995 | P45382 | - | 878944 - 880050 | 39230.6 |
| Trna-arg | Not Available | Not Available | + | 880552 - 880628 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.