Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna (uridine(54)-c5)-methyltransferase trma | M5M_RS03705 | B3PJ74 | + | 812833 - 813924 | 41164.0 |
| duf2489 domain-containing protein | M5M_RS03710 | Not Available | - | 813908 - 814363 | 17125.7 |
| dna recombination protein rmuc | M5M_RS03715 | Q9JWG3 | - | 814360 - 815898 | 58389.3 |
| tol-pal system ybgf family protein | M5M_RS03720 | Not Available | + | 816002 - 816439 | 15782.8 |
| hypothetical protein | M5M_RS03725 | Not Available | + | 816608 - 816895 | 10568.7 |
| nudix domain-containing protein | M5M_RS03730 | Not Available | - | 816901 - 817518 | 22530.0 |
| pd-(d/e)xk nuclease family protein | M5M_RS03735 | Not Available | + | 817601 - 820243 | 98721.2 |
| exodeoxyribonuclease v subunit beta | M5M_RS03740 | A9VJ02 | + | 820240 - 823701 | 128243.0 |
| 3-deoxy-7-phosphoheptulonate synthase | M5M_RS03745 | P00888 | + | 823835 - 824902 | 38785.4 |
| pre-peptidase c-terminal domain-containing protein | M5M_RS20935 | P23314 | - | 824972 - 827323 | 79643.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.