Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gdp-mannose 4,6-dehydratase | M5M_RS02660 | Q56598 | + | 590761 - 591876 | 41943.0 |
| gdp-l-fucose synthase | M5M_RS02665 | P32055 | + | 591932 - 592891 | 35944.9 |
| gdp-mannose mannosyl hydrolase | M5M_RS02670 | Q9F7A2 | + | 592897 - 593352 | 17289.4 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | M5M_RS02675 | Q8X7P1 | + | 593354 - 594763 | 52527.0 |
| hypothetical protein | M5M_RS02680 | Not Available | + | 594776 - 595663 | 34039.4 |
| glycosyltransferase family 10 domain-containing protein | M5M_RS02685 | Not Available | + | 595792 - 596685 | 34511.1 |
| nucleotide sugar dehydrogenase | M5M_RS02690 | O33952 | + | 596733 - 597899 | 43686.9 |
| dtdp-glucose 4,6-dehydratase | M5M_RS02695 | Q9S642 | + | 598026 - 599039 | 37491.4 |
| glucose-1-phosphate thymidylyltransferase rfba | M5M_RS02700 | P55255 | + | 599041 - 599913 | 32028.5 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | M5M_RS02705 | Q9HU21 | + | 599925 - 600473 | 21050.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.