Simiduia agarivorans SA1 = DSM 21679

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and utilizes an organotrophic lifestyle, deriving energy from organic compounds. This microbe thrives optimally at a temperature of 32.0°C, indicating a preference for moderately warm environments. As an aerobic organism, S. agarivorans requires oxygen for its metabolic processes, which aligns with its classification as a chemotroph that relies on chemical sources of energy rather than photosynthesis. The specific ecological niche of Simiduia agarivorans has not been detailed in the provided traits; however, its characteristics suggest a potential role in the degradation of organic materials in oxygen-rich environments. The capacity to utilize organic substrates may facilitate nutrient cycling in its habitat, possibly contributing to the breakdown of complex organic molecules. This functional role could be particularly significant in marine ecosystems, where organic matter is abundant, and microbial decomposition is essential for maintaining ecological balance. Further exploration of its metabolic pathways and interactions within its environment could provide deeper insights into its ecological contributions and potential applications in bioremediation or organic waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia agarivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Simiduia agarivorans SA1 = DSM 21679

Accession NumberNC_018868.3

Gene Summary

Adenine Count

951810 bp

Thymine Count

947571 bp

Guanine Count

1201677 bp

Cytosine Count

1199168 bp

Genome Length

4300227 bp

Protein-coding Genes

3817 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter transmembrane domain-containing proteinM5M_RS18775P50598+4204145 - 420482824839.9
protein tolrM5M_RS18780P50599+4204882 - 420527714175.5
cell envelope integrity protein tolaM5M_RS18785Not Available+4205281 - 420603928558.1
tol-pal system beta propeller repeat protein tolbM5M_RS18790Q21HP0+4206051 - 420732246465.4
peptidoglycan-associated lipoprotein palM5M_RS18795Q9I4Z4+4207349 - 420783117735.9
tol-pal system protein ybgfM5M_RS18800Not Available+4207937 - 420865326237.1
7-carboxy-7-deazaguanine synthase queeM5M_RS18805Q1IHK7+4208717 - 420936724317.1
abc transporter substrate-binding proteinM5M_RS18810Not Available+4209351 - 421021131550.2
7-cyano-7-deazaguanine synthase quecM5M_RS18815C3JYR8+4210204 - 421087823941.5
Trna-lysNot AvailableNot Available+4210960 - 4211035Not Available

Displaying genes 3781 – 3790 of 3868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

255 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 255 metabolites