Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | M5M_RS18280 | Q9I6Z9 | - | 4094726 - 4095634 | 33780.4 |
| lysr family transcriptional regulator | M5M_RS18285 | Not Available | - | 4095612 - 4096526 | 33013.2 |
| shikimate kinase | M5M_RS18290 | Q1IGA8 | + | 4096677 - 4097183 | 18794.6 |
| agmatinase | M5M_RS18295 | Q9I3S3 | + | 4097308 - 4098270 | 34424.4 |
| glu/leu/phe/val dehydrogenase dimerization domain-containing protein | M5M_RS18300 | Q60030 | + | 4098546 - 4099586 | 37240.1 |
| nadh:flavin oxidoreductase | M5M_RS18305 | A0A1U8QTA2 | - | 4100302 - 4101402 | 39913.6 |
| tetr/acrr family transcriptional regulator | M5M_RS18310 | Not Available | - | 4101428 - 4102003 | 21918.2 |
| cdf family co(ii)/ni(ii) efflux transporter dmef | M5M_RS18315 | Q8ZQT3 | - | 4102394 - 4103206 | 29365.6 |
| metal/formaldehyde-sensitive transcriptional repressor | M5M_RS18320 | P55757 | + | 4103281 - 4103550 | 10166.6 |
| lrp/asnc family transcriptional regulator | M5M_RS18325 | P42179 | - | 4103559 - 4104014 | 17143.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.