Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ykof family thiamine/hydroxymethylpyrimidine-binding protein | M5M_RS15625 | Not Available | - | 3461432 - 3461692 | 9810.92 |
| tonb-dependent receptor | M5M_RS15630 | Not Available | - | 3461704 - 3463833 | 79127.0 |
| hybrid sensor histidine kinase/response regulator | M5M_RS15635 | Q86CZ2 | + | 3464068 - 3465774 | 62455.3 |
| hypothetical protein | M5M_RS15640 | Not Available | - | 3465938 - 3466513 | 21130.0 |
| duf4386 domain-containing protein | M5M_RS15650 | Not Available | - | 3466881 - 3467543 | 23821.6 |
| duf998 domain-containing protein | M5M_RS15655 | Not Available | - | 3467699 - 3468295 | 21484.7 |
| duf5700 domain-containing putative zn-dependent protease | M5M_RS15660 | Not Available | - | 3468408 - 3469484 | 40275.9 |
| trna-binding protein | M5M_RS15665 | P37584 | - | 3469647 - 3469985 | 12268.8 |
| 2-oxo acid dehydrogenase subunit e2 | M5M_RS15670 | P11181 | - | 3470087 - 3471346 | 45035.4 |
| alpha-ketoacid dehydrogenase subunit beta | M5M_RS15675 | Q55FN7 | - | 3471538 - 3472515 | 35722.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.