Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | M5M_RS15325 | A1S2J9 | - | 3391755 - 3393338 | 56176.8 |
| dna-binding transcriptional regulator fis | M5M_RS15330 | Q9HUW0 | - | 3393435 - 3393719 | 10548.7 |
| trna dihydrouridine synthase dusb | M5M_RS15335 | Q9HUW1 | - | 3393737 - 3394771 | 37246.0 |
| zinc-ribbon and duf3426 domain-containing protein | M5M_RS15340 | Not Available | - | 3394924 - 3396360 | 52463.2 |
| 50s ribosomal protein l11 methyltransferase | M5M_RS15345 | B3PBH5 | - | 3396563 - 3397438 | 31556.0 |
| laci family dna-binding transcriptional regulator | M5M_RS15350 | P24242 | + | 3397616 - 3398644 | 37129.1 |
| integron integrase | M5M_RS15355 | P62590 | - | 3398673 - 3399638 | 36752.6 |
| hypothetical protein | M5M_RS20250 | Not Available | + | 3400316 - 3400774 | 16624.2 |
| nadar family protein | M5M_RS15360 | K7WIZ6 | + | 3401183 - 3401617 | 16691.7 |
| lysr family transcriptional regulator | M5M_RS15370 | Not Available | - | 3402159 - 3403031 | 32367.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.