Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nucleoside-binding outer membrane protein | M5M_RS15025 | Not Available | - | 3324217 - 3325020 | 29719.0 |
| rdd family protein | M5M_RS19680 | Not Available | + | 3325175 - 3325852 | 25596.1 |
| trna epoxyqueuosine(34) reductase queg | M5M_RS15035 | Q9HUL4 | - | 3325877 - 3327025 | 42948.1 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | M5M_RS15040 | Q83CM5 | + | 3327112 - 3328608 | 50254.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | M5M_RS15045 | P0AF68 | + | 3328605 - 3329099 | 17436.8 |
| n-acetylmuramoyl-l-alanine amidase | M5M_RS15050 | P63884 | + | 3329113 - 3330459 | 49054.1 |
| dna mismatch repair endonuclease mutl | M5M_RS15055 | B3PDC3 | + | 3330459 - 3332312 | 68270.4 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | M5M_RS15060 | B3PDC2 | + | 3332312 - 3333286 | 35758.9 |
| rna chaperone hfq | M5M_RS15065 | B3PDC1 | + | 3333413 - 3333673 | 9511.54 |
| ribosome rescue gtpase hflx | M5M_RS15070 | P25519 | + | 3333734 - 3335047 | 49157.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.