Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| d-aminoacyl-trna deacylase | M5M_RS14325 | A4VGD5 | + | 3170752 - 3171186 | 15479.7 |
| hd domain-containing phosphohydrolase | M5M_RS14330 | Q4UU85 | + | 3171236 - 3172303 | 40182.1 |
| cold-shock protein | M5M_RS14335 | P72192 | - | 3172368 - 3172577 | 7599.99 |
| twin-arginine translocase subunit tatc | M5M_RS14340 | P54085 | - | 3172783 - 3173550 | 28192.3 |
| sec-independent protein translocase protein tatb | M5M_RS14345 | A4VGD9 | - | 3173547 - 3173912 | 13905.5 |
| twin-arginine translocase tata/tate family subunit | M5M_RS14350 | A4XPM2 | - | 3173928 - 3174167 | 8522.39 |
| phosphoribosyl-atp diphosphatase | M5M_RS14355 | A1U671 | - | 3174189 - 3174521 | 12032.2 |
| phosphoribosyl-amp cyclohydrolase | M5M_RS14360 | C1DHS5 | - | 3174518 - 3174904 | 14301.0 |
| ubiquinone biosynthesis regulatory protein kinase ubib | M5M_RS14365 | B3PH50 | - | 3174982 - 3176610 | 61112.2 |
| scp2 domain-containing protein | M5M_RS14370 | Not Available | - | 3176621 - 3177238 | 22519.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.