Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid transaminase | M5M_RS13400 | O86428 | + | 2984905 - 2985834 | 34635.4 |
| glycosyltransferase family 4 protein | M5M_RS13405 | Not Available | + | 2985886 - 2987010 | 42317.1 |
| lipopolysaccharide kinase inaa family protein | M5M_RS13410 | Not Available | + | 2987021 - 2987767 | 28621.2 |
| dtdp-4-dehydrorhamnose reductase | M5M_RS13415 | O66251 | + | 2987888 - 2988805 | 32200.8 |
| lipid a export permease/atp-binding protein msba | M5M_RS13420 | Q5P2S7 | + | 2988841 - 2990613 | 64804.4 |
| bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hlde | M5M_RS13425 | A4XPU9 | + | 2990610 - 2992052 | 51353.9 |
| hypothetical protein | M5M_RS13430 | Not Available | + | 2992152 - 2992538 | 14216.5 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | M5M_RS13435 | P37995 | - | 2992532 - 2993260 | 26182.6 |
| methylenetetrahydrofolate reductase | M5M_RS13440 | O67422 | - | 2993261 - 2994103 | 31162.4 |
| adenosylhomocysteinase | M5M_RS13445 | Q2SLT4 | - | 2994182 - 2995606 | 52226.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.