Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamine--fructose-6-phosphate transaminase (isomerizing) | M5M_RS12300 | Q88BX8 | + | 2767238 - 2769067 | 66104.2 |
| s4 domain-containing protein | M5M_RS20795 | Not Available | + | 2769067 - 2769297 | 8226.94 |
| tlya family rna methyltransferase | M5M_RS12305 | P19672 | + | 2769299 - 2769808 | 18296.1 |
| duf6624 domain-containing protein | M5M_RS12310 | Not Available | - | 2769836 - 2770792 | 36967.6 |
| abc transporter transmembrane domain-containing protein | M5M_RS12315 | P46118 | - | 2770851 - 2771694 | 30898.8 |
| dna helicase ii | M5M_RS12320 | Q05311 | + | 2771856 - 2774033 | 81786.2 |
| trap transporter substrate-binding protein | M5M_RS12325 | Q8YSQ6 | + | 2774057 - 2775178 | 41644.7 |
| acyl-coa thioesterase | M5M_RS12330 | P44886 | - | 2775215 - 2775610 | 14072.9 |
| trap transporter large permease subunit | M5M_RS12335 | Q9KQS1 | - | 2775644 - 2777011 | 47556.4 |
| trap transporter small permease subunit | M5M_RS12340 | Not Available | - | 2777008 - 2777529 | 19412.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.