Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system minor pseudopilin gspk | M5M_RS11920 | Not Available | - | 2681864 - 2683048 | 43337.6 |
| type ii secretion system protein gspj | M5M_RS11925 | Not Available | - | 2683045 - 2683806 | 28672.1 |
| type ii secretion system minor pseudopilin gspi | M5M_RS11930 | Q00516 | - | 2683808 - 2684173 | 13551.6 |
| type ii secretion system minor pseudopilin gsph | M5M_RS11935 | Not Available | - | 2684170 - 2684667 | 18604.2 |
| type ii secretion system major pseudopilin gspg | M5M_RS11940 | Q00514 | - | 2684671 - 2685120 | 16246.3 |
| type ii secretion system f family protein | M5M_RS20780 | P31705 | - | 2685167 - 2685370 | 7272.16 |
| hypothetical protein | M5M_RS20785 | P15745 | - | 2685342 - 2685683 | 12067.9 |
| type ii secretion system f family protein | M5M_RS20790 | Q00513 | - | 2685634 - 2686395 | 27878.1 |
| gspe/pule family protein | M5M_RS11950 | Q00512 | - | 2686405 - 2687838 | 52225.2 |
| type ii secretion system secretin gspd | M5M_RS11955 | Not Available | - | 2687841 - 2689844 | 71990.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.