Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Cellvibrionaceae
Genus
Simiduia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Simiduia |
| Species | Simiduia agarivorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Simiduia agarivorans SA1 = DSM 21679
Accession NumberNC_018868.3
Gene Summary
Adenine Count
951810 bp
Thymine Count
947571 bp
Guanine Count
1201677 bp
Cytosine Count
1199168 bp
Genome Length
4300227 bp
Protein-coding Genes
3817 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | M5M_RS11675 | P19572 | + | 2629688 - 2630935 | 44336.2 |
| diaminopimelate epimerase | M5M_RS11680 | B3PEI8 | + | 2630991 - 2631821 | 29812.8 |
| duf484 family protein | M5M_RS11685 | Not Available | + | 2631839 - 2632510 | 25093.2 |
| tyrosine recombinase xerc | M5M_RS11690 | Q500B4 | + | 2632510 - 2633427 | 34008.6 |
| had family hydrolase | M5M_RS11695 | Not Available | + | 2633541 - 2634272 | 27548.9 |
| helix-turn-helix domain-containing protein | M5M_RS11700 | Not Available | + | 2634263 - 2634565 | 11017.1 |
| Trna-arg | Not Available | Not Available | + | 2635194 - 2635270 | Not Available |
| cytochrome c5 family protein | M5M_RS11710 | P11732 | + | 2635429 - 2635845 | 13966.7 |
| hypothetical protein | M5M_RS11715 | Not Available | - | 2635922 - 2637280 | 48375.0 |
| zinc-binding dehydrogenase | M5M_RS11720 | Q9ZGI4 | - | 2637470 - 2638510 | 37137.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.