Atlantibacter hermannii NBRC 105704

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Atlantibacter

Description

Atlantibacter hermannii NBRC 105704 is a Gram-negative bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The Gram-negative classification suggests that A. hermannii possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its environmental adaptability and survival strategies. As a facultative anaerobe, A. hermannii has the metabolic flexibility to utilize oxygen when available, while also being capable of fermentative metabolism in its absence. This trait is particularly advantageous in fluctuating environmental conditions where oxygen levels may vary, allowing the microbe to occupy diverse ecological niches. The physiological and structural characteristics of A. hermannii, including its Gram-negative nature and facultative anaerobic metabolism, suggest potential roles in various microbial communities, particularly in environments where organic matter is present and oxygen can be limited. Such traits may indicate its involvement in nutrient cycling or organic decomposition processes, although specific ecological interactions remain to be elucidated. Further investigations into the ecological roles of A. hermannii could provide insight into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusAtlantibacter
SpeciesAtlantibacter hermannii
StrainNBRC 105704

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Atlantibacter hermannii NBRC 105704
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Atlantibacter hermannii NBRC 105704


Gene Summary

Adenine Count

1031649 bp

Thymine Count

1032730 bp

Guanine Count

1213726 bp

Cytosine Count

1217175 bp

Genome Length

4495280 bp

Protein-coding Genes

4035 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+100860 - 100871Not Available
Conserved bacterial proteinEH105704_01_01090Not Available+108732 - 11001549494.2
Tail fiberEH105704_01_01100Not Available-110605 - 11210753062.7
Trna-asn;Not AvailableNot Available+110654 - 110726Not Available
Tail fiberEH105704_01_01110Not Available-112156 - 115965137621.0
Tail assembly proteinEH105704_01_01120Not Available-116024 - 11662621023.9
Gp19EH105704_01_01130Not Available-116678 - 11701311683.9
Minor tail protein kEH105704_01_01140Not Available-117044 - 11775427419.4
Minor tail protein lEH105704_01_01150Not Available-117756 - 11850827590.2
Trna-asn;Not AvailableNot Available+118274 - 118346Not Available

Displaying genes 1 – 10 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1981 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1981 metabolites